YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18129282
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.84
Transmembrane Helix	21	42	0.67
Non-Cytoplasmic	43	59	0.79
Transmembrane Helix	60	82	0.79
Cytoplasmic	83	148	0.95
Transmembrane Helix	149	172	0.88
Non-Cytoplasmic	173	192	0.84
Transmembrane Helix	193	211	0.87
Cytoplasmic	212	216	0.76
Transmembrane Helix	217	239	0.90
Non-Cytoplasmic	240	264	0.86
Transmembrane Helix	265	284	0.89
Cytoplasmic	285	295	0.67
Transmembrane Helix	296	317	0.87
Non-Cytoplasmic	318	336	0.91
Transmembrane Helix	337	363	0.82
Cytoplasmic	364	383	0.94
Transmembrane Helix	384	408	0.85
Non-Cytoplasmic	409	417	0.83
Transmembrane Helix	418	440	0.91
Cytoplasmic	441	446	0.76
Transmembrane Helix	447	466	0.92
Non-Cytoplasmic	467	472	0.83
Transmembrane Helix	473	493	0.93
Cytoplasmic	494	510	0.90
Transmembrane Helix	511	532	0.83
Non-Cytoplasmic	533	814	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDREVGPHGG GRDHGSNYKQ LLLLAYQSLG VVYGDLSTSP LYVYRSVFSG KLQHHQDDDA  60
   61 IFGVFSLTFW TLTLVALLKY VVIMLSADDN GEGGTFALYS LLCRHAKFSL LPNQQAADEE 120
  121 LSTYYRPGYA PRNAASFKRF LEKHKRLRNL LLVIVLFGAG MVIGDGTLTP AISVLSSISG 180
  181 LQVRAKNLTD DEVVIIACMV LVGLFALQHY GTQKVAFLFA PVVMLWLLCI GVIGLYNTIH 240
  241 WNRRIYHALS PHYIYRFFKA TGKDGWLSLG GILLSITGAE AMFADLGHFN KASIRIAFVG 300
  301 VIYPCLVLQY MGQAAFLSKN LIDFPTSFYA SIPESVFWPV FVVATLAAIV ASQAVISATF 360
  361 SIVKQCHALG CFPRVKIVHT SRWIYGRIYI PEINWILMVL CLAVTIGFRD TRLIGNAYGI 420
  421 AYITVMFVTT WLMALVIFFV WQKNIGFSLL FLLFFGVIDV IYLSSSLMKV PQGGWVPIIL 480
  481 SLIFTIIMYV WHYGTRRKYQ FDLQNKVSMK WILSLGPSLG IVRIPGIGLI YTELVTGVPA 540
  541 IFSHFVTNLP AFHEVLVFVC VKSVPVPFVP LEERYLVGRI GPRSYQMYRC IIRYGYKDVK 600
  601 KDDDDFENQL VMSIAEFIQM EAEEATSGGS GEASAFDGRM AVIRTSGSFG SRPRLVTRNA 660
  661 DETESIVSIR SSKSETLQSL QSLYEQESPS WARRRRVRFE LPEATQVLDD QVREELSSLV 720
  721 EAKHAGVTYV LGHSYIKARK TSSFLKKFVI DVAYSFLRKN CRGPAVSLNI PHVSLIESLK 780
  781 QRDSCSRFSK RNNRRMLKLV KFPVFTKRSQ KKDQ