YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIPF4_CHICK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPPGPQQPP PPPLFTPNNG DFTFVSSADA EDPSGSITTP DVKLNLGGEF IKESSATTFL  60
   61 RQRGYGWLLE VEDDDPEDNK PLLEELDIDL KDIYYKIRCV LMPMPSLGFN RQVVRDNPDF 120
  121 WGPLAVVLFF SMISLYGQFK VVSWIITIWI FGSLTIFLLA RVLGGEVAYG QVLGVIGYSL 180
  181 LPLIVIAPVL LVVGSFEVVS TLIKLFGVFW AAYSAASLLV GEEFKTKKPL LIYPIFLLYI 240
  241 YFLSLYTGV

Type	Start	End	Confidence
Cytoplasmic	1	119	0.96
Transmembrane Helix	120	137	0.94
Non-Cytoplasmic	138	144	0.68
Transmembrane Helix	145	164	0.94
Cytoplasmic	165	171	0.81
Transmembrane Helix	172	194	0.90
Non-Cytoplasmic	195	200	0.78
Transmembrane Helix	201	221	0.92
Cytoplasmic	222	229	0.87
Transmembrane Helix	230	248	0.91
Non-Cytoplasmic	249	249	0.94