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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|61098422, gi|...
Protein type: Transmembrane
Type Confidence: 0.64
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRRKVDNRI RVLIENGVAE RQRGLFVVVG DRGKDQVVIL HHMLSKATVK ARPSVLWCYK  60
   61 KELGFSSHRK KRMRQLQKKI KSGTLNIKDD DPFELFIAAT NIRYCYYNET HKILGNTFGM 120
  121 CVLQDFEALT PNLLARTVET VEGGGIVVIL LRTMNSLKQL YTMTMDVHSR YRTEAHQDVV 180
  181 GRFNERFILS LASCKNCIVI DDQLNILPIS SHVANITPVP PQSQEDSLRP QDLELKELKE 240
  241 SLQDTQPVGV LVDGCKTLDQ AKAVLKFIEA ISEKTLRSTV ALTAARGRGK SAALGLAIVG 300
  301 AVAFGYSNIF VTSPSPDNLH TLFEFIFKGF DALQYQEHLD YEIIQSLNPE FNKAVVRVNV 360
  361 FKEHRQTIQY IHPADSVKLG QAELVVIDEA AAIPLPLVKK LLGPYLVFMA STINGYEGTG 420
  421 RSLSLKLIQQ LRQQSAQAQV TMTAENKSTA TAKLASARTL HEVSLHESIR YAPGDPVEKW 480
  481 LNDLLCLDCL SITRIISGCP LPEDCDLYYV NRDTLFCYHR ASELFLQRLM ALYVASHYKN 540
  541 SPNDLQMLSD APAHHLFCLL PPVPPTQNSL PEVLAVVQVC MEGEISRQSI MNSLSRGKKA 600
  601 SGDLIPWTIS EQFQDPDFGA LSGGRVVRIA VHPDYQGMGY GSRALNLLQM YYEGKFPCLE 660
  661 EKTVQKPKEI ATVSSETVSL LEEVVTPRKD LPPLLLKLSE RQAESLDYLG VSYGLTPRLL 720
  721 KFWKRAGFVP VYLRQTPNDL TGEHSCIMMK MLNEEDVEQE PWLTAFWKDF RRRFLSLLSY 780
  781 QFSTFSPSLA LNILQNKNIK QQSQPPISRA ELESAFIPYD LKRLEMYSRN MVDYHLIMDM 840
  841 VPTIARMFFL NQLGDISLSA AQSALLLGIG LQHKSLDQLE KEVELPSSQL MGLFNRIIRK 900
  901 VVQLFNTVQE KAVEEQMVAT KDIVMEPTIK SLNDDLEEAA KEFQEKHKQE VGKLKEMDLT 960
  961 QYIIRGDDEE WNEVLSKAGQ NASIISVKSE KKRKLETVRG HKQQKKFKKT KDIKQKRKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle