YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC22B_CHICK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLLTMIARV ADGLPLAASM QEDEQSGRDL QQYQSQAKQL FRKLNEQSPT RCTLEAGAMA  60
   61 FHYIIEKGVC YLVLCEAAFP KKLAFAYLED LQSEFDEQHG KKVPTVSRPY SFIEFDTYIQ 120
  121 KTKKLYIDSR ARRNLGSINT ELQDVQRIMV ANIEEVLQRG EALSALDSKA NNLSSLSKKY 180
  181 RQDAKYLNMR STYAKLAAVA VFFIMLIVYV RFWWL

Type	Start	End	Confidence
Cytoplasmic	1	190	0.92
Transmembrane Helix	191	213	0.89
Non-Cytoplasmic	214	215	0.83