YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ppk7-PA
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.42
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLVYFPPSK LQQQQQPSRS SRLAQQLAQS SWQLALRFGK RTTIHGLDRL LSAKASRWER  60
   61 FVWLCTFVSA FLGAVYVCLI LSARYNAAHF QTVVDSTRFP VYRIPFPVIT ICNRNRLNWQ 120
  121 RLAEAKSRFL ANGSNSAQQE LFELIVGTYD DAYFGHFQSF ERLRNQPTEL LNYVNFSQVV 180
  181 DFMTWRCNEL LAECLWRHHA YDCCEIFSKR RSKNGLCWAF NSLETEEGRR MQLLDPMWPW 240
  241 RTGSAGPMSA LSVRVLIQPA KHWPGHRETN AMKGIDVMVT EPFVWHNNPF FVAANTETTM 300
  301 EIEPVIYFYD NDTRGVRSDQ RQCVFDDEHN SKDFKSLQGY VYMIENCQSE CHQEYLVRYC 360
  361 NCTMDLLFPP GQYRSCRAQD LLCLAEHNDL LIYSHNPGEK EFVRNQFQGM SCKCFRNCYS 420
  421 LNYISDVRPA FLPPDVYANN SYVDLDVHFR FETIMVYRTS LVFGWVDLMV SFGGIAGLFL 480
  481 GCSLISGMEL AYFLCIEVPA FGLDGLRRRW KARRQMDLGV TVPTPTLNFQ QTTPSQLMEN 540
  541 YIMQLKAEKA QQQKANFQNW HRITFAQKHV IGK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle