YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ppk6-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIESGKWPTP GKKNSKGDGS RKRGKDPSLI RTAILATFWE YTERTKVSGM WLMRRNRTYG  60
   61 LSRFIWSSVL LQLLLLSIYL TLLLWLKFYS YPILNTISND LSITDVAFPG VTICSPKVVN 120
  121 SERVDRYVKT LKIPKEYDMA EVIAGFDFLN AFTDQSFEPP GHDSYRATDA VLRLNNVSIW 180
  181 EAAMAVSPGC FDYVKRCFWG HTEFQCNQSH EYLSFIPTTA YLGPCCSFNY NPRNASFVPF 240
  241 SANIFGMDGG LTFVGAEGSE RNLNTGLIVL VHHPMDYVTE AAASVTITAQ SESFVEVSPT 300
  301 VQSSSVEVLE LSERKRDCLI SGDLQLSNYR QAACLLACQT EAIVKKCGCH PYLLPIVGNK 360
  361 FKECNLNDTF CYSANYDNFK SVRCDQCLPN CYDVTYSTLS YKTDLNQHKY SVSRFYSPEL 420
  421 LNNDSFVLRV YLAKQVVPVI RKVTVMSWIG LLSDLGGIFN LCLGLSMISV VEFFYYCTYR 480
  481 LYINYQLQKV QQPRKAWQ

Type	Start	End	Confidence
Cytoplasmic	1	63	0.95
Transmembrane Helix	64	85	0.92
Non-Cytoplasmic	86	455	0.86
Transmembrane Helix	456	479	0.51
Cytoplasmic	480	498	0.48