YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	F172A_CHICK
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFYFNVLNL LTVWVMMAQL QQGVPDEKEK TTALKDLLSR IDLDELMKKD EPPLEFPDTL  60
   61 EGFEYSFNEK GQLRHAKTGE PFVFNYREDL HRWNQKRYEA LGEIITKHVY GLLEKECHLK 120
  121 KVTLPVDATE NEPKSFIFMS EDALTNPDKL LVLIHGNGVV RAGQWARRLI INEDLDSGTQ 180
  181 IPYIKKATEE GYGVIVLNPN ENYIEVEKTK AQVQLSSDSS DEPAEKRERK DKIQKETKKR 240
  241 RDFYEKYRNP QKEKETMQMY IRDNGSPEEH AIYVWDHFIS QSAAENVFFV AHSYGGLAFV 300
  301 ELMIQRETEV KNKVTAVALT DSVHNVWHQE AGKTIREWMR ENCCNWVSSS EPLDTSVESM 360
  361 LPDCPRVSAG TERHELTSWK SFPSIFKFFS EAMEAKNSSV KPAPTRRSNR IKYEEL

Type	Start	End	Confidence
Signal Peptide	1	20	0.55
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	416	0.99