YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53131362, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILRNSCYLP NKNSDTTKPM SGHRNLKRRC GESHLESPAG CAHGPAAACV LSKLVQLPTP  60
   61 PLSKHQLKRL EEHKYQSAGR SLLEPLMQGY WEWLVGKVPA WIAPNLITII GLLINIFTTL 120
  121 LLVYYCPTAT EQAPPWAYIA CACGLFIYQS LDTIDGKQAR RTNSSTPLGE LFDHGCDSLS 180
  181 TVFVVLGTCI AVQLGTNPDW MFFCCFAGTF MFYCAHWQTY VSGTLRFGII DVTEVQIFII 240
  241 IMHLLAVIGG PPFWQSLIPI LNIQVKIFPA LCTVAGTIFS CTNYFGVIFT GGVGKNGSTI 300
  301 AGTSVLSPFL HIGSVIALAA MIYKKSAVQL FEKHPCLYIL TFGFVSAKIT NKLVVAHMTK 360
  361 SEMHLHDTAF IGPALLFLDQ YFNSFIDEYI VLWIALIFSL FDLLRYCVSV CNQIAAHLHI 420
  421 HVFRIKSSST HSNHH

Type	Start	End	Confidence
Cytoplasmic	1	100	0.94
Transmembrane Helix	101	125	0.85
Non-Cytoplasmic	126	133	0.79
Transmembrane Helix	134	151	0.81
Cytoplasmic	152	199	0.57
Transmembrane Helix	200	220	0.86
Non-Cytoplasmic	221	234	0.55
Transmembrane Helix	235	258	0.80
Cytoplasmic	259	266	0.55
Transmembrane Helix	267	289	0.89
Non-Cytoplasmic	290	299	0.53
Transmembrane Helix	300	323	0.87
Cytoplasmic	324	335	0.57
Transmembrane Helix	336	356	0.58
Non-Cytoplasmic	357	388	0.53
Transmembrane Helix	389	408	0.77
Cytoplasmic	409	435	0.81