YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LYSM3_CHICK
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRGTGCSL QLPAGTQPPG GGHLYPGESE GPEEESEVFE LRPRGREKVR RSTSRDRLDG  60
   61 IILLTKDIQE GDTLNAIALQ YCCSVADIKR VNNLINDQDF FALRSIKIPV KKFSVLTETH 120
  121 VSPKGRTVLR PAHYSPEVQE ASPDKFTANE TAGNFLKEVD RDIEEIVKCN DTKRENLNEV 180
  181 VSALAAQQVC FETDGRSKKC KDPYYGADWG IGWWTAVVIM LIIGIVTPVF YLLYYEVLVK 240
  241 ADVSHHSTME SAHSFVTAAS HQKQIEHGRS PANSINVDSQ GDIRPYNRKP QANVIHRHIT 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	210	0.73
Transmembrane Helix	211	234	0.83
Non-Cytoplasmic	235	300	0.77