YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MSMO1_CHICK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVNDSVNIL NSAYLAVEYI DSFLPDNPLQ QPFKNAWNYM LDNYTKFQIA TWGSLLVHEA  60
   61 SYFLLCVPGF IFQFIPYMQK YKIQPDKPET WEKQWKCFKT LIFNHFFIQL PLICGTYYFT 120
  121 EYFNIPYEWE EMPRWYVLLA QCFGCAVIED AWHYFLHRLL HHKRIYKYIH KVHHEFVSPF 180
  181 GMQAEYAHPL ETLILGAGFF IGIVVFCNHV VLLWAWVICR LMETIDVHSG YDIPLNPLHL 240
  241 VPFYAGARFH DFHHMNFIGN YASTFTWWDR IFGTDSQFIA YKEKEKKQQL RMKKTN

Type	Start	End	Confidence
Non-Cytoplasmic	1	54	0.64
Transmembrane Helix	55	77	0.67
Cytoplasmic	78	100	0.77
Transmembrane Helix	101	120	0.88
Non-Cytoplasmic	121	134	0.79
Transmembrane Helix	135	156	0.73
Cytoplasmic	157	188	0.56
Transmembrane Helix	189	203	0.70
Non-Cytoplasmic	204	204	0.00
Transmembrane Helix	205	219	0.76
Cytoplasmic	220	296	0.55