YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|61889131, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGGLQLLG FVLAFLGWMG IIISTAMPQW KMASYAGDNI VTAQALYEGL WMSCAMQSTG  60
   61 QIQCKVYDSL LKLEGSLQAT RALMVAAILL GLVGVFVAVT GMKCMKCMED DQVKKMRMAV 120
  121 FGGVIFIIAG LSALVATSWY GNRVARAFYD PFTPVNTRFE FGSALFIGWA AASLALLGGA 180
  181 FLCCSCPRSE TSYPPSRGYP KNAPSTGKDY V

Type	Start	End	Confidence
Cytoplasmic	1	7	0.84
Transmembrane Helix	8	27	0.95
Non-Cytoplasmic	28	81	0.91
Transmembrane Helix	82	102	0.92
Cytoplasmic	103	117	0.91
Transmembrane Helix	118	140	0.92
Non-Cytoplasmic	141	161	0.94
Transmembrane Helix	162	184	0.90
Cytoplasmic	185	211	0.95