YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPO12_ORYSI
Protein type:	Globular with Signal Peptide
Type Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEAGVAAAS LFGADRRLCS ADILPPAEVR ARIEVAVLNF LAALTDPAAP AISALPLISR  60
   61 GAANRGLRRA LLRDDVSSVY LSYASCKRSL TRANDAKAFV RVWKVMEMCY KILGEGKLVT 120
  121 LRELFYTLLS ESPTYFTCQR HVNQTVQDVV SLLRCTRQSL GIMASSRGAL IGRLVLQGPE 180
  181 EEHVDCSILG PSGHAITGDL NVLSKLIFSS DARYIIVVEK DAIFQRLAED RIYSHLPCIL 240
  241 ITAKGYPDLA TRFILHRLSQ TYPNMPIFAL VDWNPAGLAI LCTYKYGSIS MGLESYRYAC 300
  301 NVKWLGLRGD DLQLIPQSAY QELKPRDLQI AKSLLSSKFL QDKHRAELTL MLETGKRAEI 360
  361 EALYSHGFDF LGKYVARKIV QGDYI

Type	Start	End	Confidence
Signal Peptide	1	21	0.73
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	385	0.98