YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5777632
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVVQVVFAG VNIFYKLAVV CDGMDMRVLV AYRYLFASAV LAPLAYFVER GSLAQNLYIS  60
   61 GMKLTSATFA TAMTNLIPAV TFVLAVLCRY ERLAIRTVAG QAKVAGTLLG VGGAMLLTLY 120
  121 KGAELNPWHT HLDLVAALEA RHPAAAAATG NNDRVIMGSM LVVGSCVFYA VWLILQAKLS 180
  181 REYPFHYTST ALMCVMSGAQ SAAFALLVDR EPARWRLGLD IRLLSVVYSG VLASGVMLVV 240
  241 LSWCVKRRGP LFASVFNPLM LVVVAVLGSL LLDEKMHVGT LLGAALIVVG LYAVLWGKGR 300
  301 ETALEAAKVG DDNDNHHIHV VVVVPPEQAQ PQPHQQAEAD ADATTTACEQ PSDSDRANIA 360
  361 SSLRHSHRYF HRSCGF

Type	Start	End	Confidence
Cytoplasmic	1	29	0.92
Transmembrane Helix	30	48	0.91
Non-Cytoplasmic	49	66	0.86
Transmembrane Helix	67	88	0.93
Cytoplasmic	89	99	0.87
Transmembrane Helix	100	120	0.90
Non-Cytoplasmic	121	154	0.94
Transmembrane Helix	155	175	0.95
Cytoplasmic	176	184	0.87
Transmembrane Helix	185	207	0.91
Non-Cytoplasmic	208	223	0.87
Transmembrane Helix	224	244	0.94
Cytoplasmic	245	250	0.86
Transmembrane Helix	251	272	0.91
Non-Cytoplasmic	273	277	0.84
Transmembrane Helix	278	296	0.96
Cytoplasmic	297	376	0.98