YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12331173
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.95
Transmembrane Helix	7	28	0.90
Cytoplasmic	29	40	0.80
Transmembrane Helix	41	60	0.94
Non-Cytoplasmic	61	70	0.86
Transmembrane Helix	71	92	0.87
Cytoplasmic	93	101	0.82
Transmembrane Helix	102	123	0.93
Non-Cytoplasmic	124	131	0.75
Transmembrane Helix	132	152	0.95
Cytoplasmic	153	494	0.99
Transmembrane Helix	495	515	0.90
Non-Cytoplasmic	516	523	0.82
Transmembrane Helix	524	545	0.87
Cytoplasmic	546	559	0.69
Transmembrane Helix	560	581	0.86
Non-Cytoplasmic	582	587	0.69
Transmembrane Helix	588	605	0.56
Cytoplasmic	606	612	0.46
Transmembrane Helix	613	637	0.89
Non-Cytoplasmic	638	639	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS  60
   61 TNNPYAMNLR FIAADTLQKI LMLALLVLWA NFTRSGSLEW SITIFSLSTL PNTLVMGIPL 120
  121 LIAMYGEYAG SLMVQVVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD 180
  181 VVSLDGHDFL ETDAEIGNDG KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP 240
  241 RGSNFNQSDF YSMMGFPGGR LSNFGPADMY SMQSSRGPTP RPSNFEENCA MASSPKFGYH 300
  301 PGGGGGSYPA PNPEFSSTST ANKVVNKTPK DTNTNQQTNL HTDGKSNNHD ASSKELHMFV 360
  361 WSSNGSPVSD RAGLNAPDSG SNNEQGGRSD QGAKEIRMLV PDQSQNSENK ALARPASGDF 420
  421 GGEPVSITRR EEGERAKDAE NGLNKPIPNA LLQSKTGLGA VPGGEASQGK HMPPASVMTR 480
  481 LILIMVWRKL IRNPNTYSSL IGLIWALVAF RWHVAMPKII QQSISILSDA GLGMAMFSLG 540
  541 LFMALQPKLI ACGNSVATFA MAVRFLTGPA VMAVASIAIG LRGDLLRVAI VQAALPQGIV 600
  601 PFVFAKEYNV HPAILSTGVI FGMLIALPIT LVYYILLGL