YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4033577
Protein type:	Globular with Signal Peptide
Type Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALAINVSSS SSSAISTSSF PSSELKVSAP RIGSLRLSDR VNVSSVSLSL SGKRSSVKPL  60
   61 NVQSIAKESF GSMVASEVTE KQDVVEVEDF EELAKSLETA SPLEIMDKAL ETFGNDIAIA 120
  121 FSGAEDVALI EYAHLTGRPF RVFSLDTGRL NPETYRLFDT VEKHYGIRIE YMFPDAVEVQ 180
  181 ALVRNKGLFS FYEDGHQECC RIRKVRPLRR ALKGLRAWIT GQRKDQSPGT RSEIPVVQVD 240
  241 PVFEGLDGGA GSLVKWNPVA NVEGNDVWNF LRTMDVPVNT LHAAGYVSIG CEPCTRAVLP 300
  301 GQHEREGRWW WEDAKAKECG LHKGNIKESS NGNATANVNG TSSTVADIFK SENVVSLSRQ 360
  361 GIENLMKLEN RKEAWIVVLY APWCPFCQAM EASFDELADK LGGSGVKVAK FRADGDQKEF 420
  421 AKRELQLGSF PTILVFPKNS SRPIKYPSEK RDVDSLTSFL NLVR

Type	Start	End	Confidence
Signal Peptide	1	21	0.57
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	464	0.99