YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28566422
Protein type:	Globular with Signal Peptide
Type Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPLSHRHLC LAFLLVCVLS AVSFFLHIHQ DSFRHGLGLS VLCPDRHLVT APVAIFCLPG  60
   61 TPMSPNTSSP CPQQPASLSG TWTIYPDGRF GNQMGQYATL LALAQLNGRR AFILPSMHAT 120
  121 LAPVFRITLP VLAPEVDSRT PWRELRLHDW MSEEYADLGD PFLKLSGFPC SWTFFHHLRE 180
  181 QIRSEFTLHD HLREEAQSVL GRLRLGRSGD RPRTFVGVHV RRGDYLQVMP QRWKGVVGNS 240
  241 AYLRQAMDWF RARHEAPVFV VTSNGMEWCR ENIDASKGDV MFAGDGQEAS PWKDFALLTQ 300
  301 CNHTIMTIGT FGFWAAYLAG GDTVYLANFT LPDSEFLKIF KPEAAFLPEW VGINADLSPL 360
  361 WTLAEP

Type	Start	End	Confidence
Signal Peptide	1	23	0.91
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	366	0.96