YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FUT1_ALOCA
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPLSHRHLC LAFLLVCVLS AISFFLHVHQ DSFRHGLGLS LLCPDRGLVT HPVAIFCLPG  60
   61 TPMSPNTSSP CPQHPASLSG TWTIYPDGRF GNQMGQYATL LALAQLNGRR AFILPAMHAA 120
  121 LAPVFRITLP VLAPEVDGHT PWRELRLHDW MSEEYADLED PFLKLSGFPC SWTFFHHLRE 180
  181 QIRSEFTLHD HLREEAQSVL RRLRLGRPWD RPRTFVGVHV RRGDYLQVMP QRWKGVVGNS 240
  241 AYLREAMDWF RARHEAPVFV VTSNGMEWCR ENIDTSKGDV MFAGDGQEAS PWKDFALLTQ 300
  301 CNHTIMTIGT FGFWAAYLAG GDTVYLANFT LPDSEFLKIF KPEAAFLPEW VGINADLSPL 360
  361 WTLAEP

Type	Start	End	Confidence
Signal Peptide	1	30	0.83
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	366	0.97