YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28566182
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSASNNART VAACVIGGIV LGASVVALHL GAGPAAPSLP PVEALRRRFR RRCRPVRVYM  60
   61 DGCFDMMHYG HCNALRQARA LGDELVVGVV SDDEITANKG PPVTPLHERM KMVRAVKWVD 120
  121 DVIPDAPYAI TEDFMNKLFN EYNIDYIIHG DDPCLLPDGT DAYALAKKAG RYKQIKRTEG 180
  181 VSTTDIVGRM LLCVRERPVS DNNSHSSLQR QFSHGHGQNI DDSGFGSGTK ISHFLPTSRR 240
  241 IVQFSNGRGP GPNSRVVYID GAFDLFHAGH VEILRLARGL GDFLLVGIHT DQTISSTRGP 300
  301 HRPIMNLHER SLSVLACRYV DEVIIGAPWH ISKDMVTTFN ISLVVHGTIA ENMDYTEDDS 360
  361 NPYAVPVAMG IYHKLESPLD ITTSTIIRRI VSNHEAYQKR NEKKEASEKK YYDSKSFVNG 420
  421 E

Type	Start	End	Confidence
Cytoplasmic	1	10	0.52
Transmembrane Helix	11	32	0.55
Non-Cytoplasmic	33	421	0.98