YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28564986
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSHSLKYN AVPEWQDHYL SYSQLKKLIY SLQARELQLL DDGGQLDRDR LKGLEGSSKA  60
   61 LKKFKEKFMS KRDKGVGEEE FGVETIELSD MKKKSKSKMP FDFDRRSSTS SERTVFNPQD 120
  121 AFLSKLTEEK LKIDDFYKKL EAQLYKKFEA LFKDLENAAA VRVENHLYAE AFEQQSASAV 180
  181 AYRVRSNQTG LSTLSKHLSN RDTRTDTDRD EEEEEEEEEE EEEEEDDDDA HDNTALLNYA 240
  241 DFNIKSQKKA ILKKHIIDLY VDMAQLKSFI ELNRIGFFKI TKKFDKTLNQ NVRSELIESG 300
  301 EFFRDTYVFQ PETLAVLDSK IGHLIEFYAA ITEQMDDLDA CKEELRSYLR DYIVWERNTV 360
  361 WKDMLGLESQ TNNLSSAGRP GANGDISELE NNTHLEYYSW YLPKPINLKV FTWEKVSVPK 420
  421 LFFTIKALKI FLIVVFTAIL LGVPTFHDEA QHRCMALVEC VAFLWASEAI PLFVTAMLVP 480
  481 LLVVLFRVLK DDKGAVMGAV AASSTILSKM WSSTIMVLLA GFTLAAALSK YNVARVLASY 540
  541 LLTVAGTKPR NLLLMVMSVV FFLSMWISNV AAPVLTYSLI QSVLRTLDSE APFAKALVLG 600
  601 VALAANVGGM ASPISSPQNV ISMDYLKPYG VGWGQFFAVA LPTGVLSMLL IWLLLVFTFK 660
  661 INTTKLIKYK PIKEHFTLKQ YYIIAVTLGT ILLWCVLSQL ENVFGASGQI AILPIVLFFG 720
  721 TGLLTTHDIN NFPWSIVILA MGGIALGAAV SSSGLLATIA EALQKRIMDY STYAILIIFG 780
  781 LVMLVVGTFV SHTVSAIIIV PLVQEIGNKL GEPKAAPILV FGCSLLASCG MGLASSGFPN 840
  841 VTAISMTDEV GNRYLNVNTF ITRGIPASLL AFVCVITLGY GIMNSVLKG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle