YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28564970
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.95
Transmembrane Helix	40	59	0.85
Non-Cytoplasmic	60	129	0.74
Transmembrane Helix	130	150	0.87
Cytoplasmic	151	167	0.63
Transmembrane Helix	168	187	0.75
Non-Cytoplasmic	188	297	0.80
Transmembrane Helix	298	321	0.71
Cytoplasmic	322	336	0.96
Transmembrane Helix	337	358	0.92
Non-Cytoplasmic	359	372	0.82
Transmembrane Helix	373	392	0.93
Cytoplasmic	393	448	0.92
Transmembrane Helix	449	466	0.83
Non-Cytoplasmic	467	472	0.77
Transmembrane Helix	473	493	0.95
Cytoplasmic	494	503	0.76
Transmembrane Helix	504	525	0.87
Non-Cytoplasmic	526	539	0.79
Transmembrane Helix	540	564	0.85
Cytoplasmic	565	579	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSFFLLGTL DSRLEPPSDL KRKQKVSRNA SKSRWGSWEF KLYYLVFAVI VPLMFKAAME  60
   61 ASNETNPNYF RYEGLLSQGW MFGRKVDNSD SQYRFFRDNF PLLAGLLFLH TVLKRGTIYL 120
  121 TKMDRIRFDF IFGLIFLFAA HGVNALRVLT HLLISFSIAK LFRKQRRLAT ILSWTYGIGS 180
  181 LFLNNSFRNY PFGSILPFLA PLDSSFKGII ERWDVFFNFT LLRMLSFNMD SLERFEAVYK 240
  241 KQRVSTPTVY DEKPELKKAA SATTLETIQE HTSSSHLLDD RSRLTAPHHI QDYNISNYLA 300
  301 YVTYTPLFIA GPIITFNDYL YQSRHTLPSI NAKRTFIYGL RFIFCVLIME FLLHFMYVVA 360
  361 VSKAKAWDGD TPFQISMIGL FNLNLIWLKL LIPWRLFRLW ALIDGIDPPE NMIRCMNNNY 420
  421 SALAFWRAWH RSYNKWVVRY IYIPLGGSKN RFLTSLAVFS FVAIWHDIEL RLLLWGWLIV 480
  481 VFLLPEIFAT AFFSKYRGEP WYRHLCGMGA VVNIWMMMIA NLFGFCLGSD GTLRLIKDMF 540
  541 GTWSGIGFFL CANFALYVAV QVMFEQREHE KRNGINVKC