YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28564940
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	159	0.86
Transmembrane Helix	160	180	0.79
Non-Cytoplasmic	181	202	0.73
Transmembrane Helix	203	227	0.82
Cytoplasmic	228	237	0.74
Transmembrane Helix	238	257	0.89
Non-Cytoplasmic	258	264	0.61
Transmembrane Helix	265	287	0.80
Cytoplasmic	288	376	0.66
Transmembrane Helix	377	400	0.83
Non-Cytoplasmic	401	426	0.52
Transmembrane Helix	427	447	0.86
Cytoplasmic	448	506	0.49
Transmembrane Helix	507	521	0.60
Non-Cytoplasmic	522	522	0.14
Transmembrane Helix	523	539	0.46
Cytoplasmic	540	559	0.72
Transmembrane Helix	560	583	0.87
Non-Cytoplasmic	584	584	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEDILENKD FLRVQKLNDS RNKRQSLHQD ELDEKDLSLG LDNVIGIGLK AESEQEQEDP  60
   61 TLKVFVKRLN WKEKYRFHKD SGEMQSMLRD VEFNYRGTIM DNVVNNINEP LKIVLQDSPA 120
  121 GKLKDGDSKT KHTTSESKKG IELHKNQELT IQTNFGRTNF SGFYVLFWFS VAFIVTKVSV 180
  181 DYYIANDGDL GQSEVIQFMT KDLISVALID LAMYLSIYFV FAVQYACKLK WISWNKEGWL 240
  241 MTSLYEAAFV IVFLYVAENV MKFHWVAKIF LFLHSLVLLM KMHSFAFYNG YLWNIWEELS 300
  301 YSKGTLAKVK DTKVSSSVIE SLEKSRNFCQ FELDCQSEKI PFPSNISVNN FFMYSMFPTL 360
  361 VYQIEYPRTK KIRWGYVFEK LCAIFGIIFI MMVVAQMFMY PVAMRAIALR DSGIPIFWDR 420
  421 IKQWPRLLLD IVPSFIMMYL LVWYLIWDAI LNCIAELTCF ADRYFYGDWW NCVSWEEFSR 480
  481 LWNVPVHKFL LRHVYHSSIS FLQLNKAQAT IATFFISSVV HELAMYVLFN KLRLFLFFLQ 540
  541 MYQLPLVKMG NSKFFKDRKV LGNVIFWIGI CTGPSLMCTL YLTF