YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28564860
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	447	0.62
Transmembrane Helix	448	469	0.77
Non-Cytoplasmic	470	491	0.65
Transmembrane Helix	492	512	0.81
Cytoplasmic	513	524	0.66
Transmembrane Helix	525	547	0.84
Non-Cytoplasmic	548	576	0.70
Transmembrane Helix	577	603	0.81
Cytoplasmic	604	615	0.84
Transmembrane Helix	616	638	0.79
Non-Cytoplasmic	639	658	0.90
Transmembrane Helix	659	682	0.91
Cytoplasmic	683	700	0.93
Transmembrane Helix	701	719	0.94
Non-Cytoplasmic	720	725	0.72
Transmembrane Helix	726	747	0.89
Cytoplasmic	748	756	0.74
Transmembrane Helix	757	780	0.82
Non-Cytoplasmic	781	794	0.79
Transmembrane Helix	795	822	0.84
Cytoplasmic	823	837	0.85
Transmembrane Helix	838	861	0.87
Non-Cytoplasmic	862	886	0.88
Transmembrane Helix	887	910	0.86
Cytoplasmic	911	916	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFSHFLKYN AVPEWQNHYV DYNELKNLIY TLQTDELNLT EGGASKDDKT ATITGKSSPK  60
   61 AFAAKLKNKL FKNGVDSNVS LTENDNEIKP GLKPDEMVRE ETFELNDLTH NAGANTLEPT 120
  121 SRFSEFKKKA HDKIFESRRS SESSDAKTLF NTYDTFMNSL TVEKLKVDDF YKRMEAKFDQ 180
  181 RFVALVKDLE KEGVSPRELN IDFFPNEDDA VPHLAADGNE VTIEREGTHD IVNDADDEDD 240
  241 DDDEEGDYGE FNDDAQDHTA LLNYSQFNIK SQKTSLLKQS ITNLYIDLCQ LKSFIELNRL 300
  301 GFNKITKKCD KVLHLNIRDE MIQTEEFFKD TYIFQKDTTL KLSKKITQLV EFYAIITGQQ 360
  361 TNIENCKKEL KSLLHDHIVW ERSNTWKDML GLLSHNDEIA TDLEGTDPNA SLLAKIKLEY 420
  421 YSWVLPRPIN LKYVTIKKLS VPKLFFTWKS FKIAFIITVT GVLLGIKTFN DPVEGRCMAL 480
  481 VECVAFLWAS EAIPLHITAF LVPLLTVLFK VLKNTDGSVM AAADASSTIL AAMWSSTIMI 540
  541 LLAGFTLGEV LSQYNVAKVV ASWLLAAAGT KPRNVLLMAM GVVFFLSMWI SNVAAPVLTY 600
  601 ALLKPLLDPL DASNDFAKAL VMGVALAANV GGMSSPISSP QNIISMQYLK PYGIGWGQFF 660
  661 AVALPTGIIA LICCWILMCL TFKINRTKLT KFKPIRTRFS LKQYYVIFVT IMTIILWCVE 720
  721 AQIEGAFGSS GLIAVLPIVL FFGTGLLSTK DLNTFPWSIV ILAMGGIALG KAVSSSGLLV 780
  781 TIATALQKKI ENDGVMAILC IFGILMLVVG TFVSHTVSAI IIIPLVQEVG DKLTDPKAAP 840
  841 ILVFGCALLS SCGMGLASSG FPNVTAISMT DSKGNRYLNM MTFLTRGVPA SLMAFVCVIT 900
  901 LGYGVMTSVL KGVATS