YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28564403
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	75	0.90
Transmembrane Helix	76	93	0.57
Non-Cytoplasmic	94	132	0.60
Transmembrane Helix	133	152	0.81
Cytoplasmic	153	161	0.52
Transmembrane Helix	162	185	0.81
Non-Cytoplasmic	186	200	0.43
Transmembrane Helix	201	218	0.55
Cytoplasmic	219	373	0.64
Transmembrane Helix	374	395	0.88
Non-Cytoplasmic	396	409	0.80
Transmembrane Helix	410	429	0.93
Cytoplasmic	430	483	0.90
Transmembrane Helix	484	502	0.84
Non-Cytoplasmic	503	509	0.78
Transmembrane Helix	510	532	0.91
Cytoplasmic	533	540	0.81
Transmembrane Helix	541	562	0.89
Non-Cytoplasmic	563	579	0.83
Transmembrane Helix	580	601	0.92
Cytoplasmic	602	616	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPTFWSQLK YYFSVEALDS RITPELDLRK RQKLKANAKN NGSESNGNGS GNNNNSSNGN  60
   61 GFVVAKSLWN TWEFKFYYVA FAIVVPCMFK TAMDASNETN PNYYRYEGYL SQGWLFGRKV 120
  121 DNSDAQYRFF RDNLFLLTSL MLIHVLIKRI AITKFHVPKL RFDFIFGLIF LFAAHGVNSL 180
  181 RILTHMGILF SIVNIFKRQR SLATALSWGY GIASLFINDK YRTFPFGNIL PFLSPLDNAY 240
  241 RGIIPRWDVF FNFTLLRMLS YNMDFLERWN KQLTPVTSNV NSNLDLPSPS RPEFRRSSSV 300
  301 STLEPIQESG KDQILNERAR LTAPHHIQDY SIANYIAYVT YTPLFIAGPI ITFNDYVYQT 360
  361 QHTLPSINKN RILIYASRFI LTLLAMEFIL HFTYVVAVSK TKAWDGDTPF QISMIGLFNL 420
  421 NIIWLKLLIP WRLFRLWALL DEIDTPENMI RLVDNNYSAL AFWRGWHRSY NKWVVRYIYI 480
  481 PLGGSHNRIL TSLAVFSFVA IWHDIQLKLL LWGWLIVLFL LPEIFATQYF AVYRNKWWYR 540
  541 HLCALGGACN IWMMMIANLF GFCLGSDGTK ALLKEMFSTF SGFTFFIVAT GCLFIAVQVM 600
  601 FELREEEKRH GINLKC