YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28564191
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	157	0.86
Transmembrane Helix	158	178	0.83
Non-Cytoplasmic	179	199	0.76
Transmembrane Helix	200	223	0.66
Cytoplasmic	224	232	0.82
Transmembrane Helix	233	253	0.92
Non-Cytoplasmic	254	266	0.67
Transmembrane Helix	267	284	0.87
Cytoplasmic	285	375	0.88
Transmembrane Helix	376	398	0.81
Non-Cytoplasmic	399	423	0.77
Transmembrane Helix	424	447	0.81
Cytoplasmic	448	508	0.68
Transmembrane Helix	509	529	0.73
Non-Cytoplasmic	530	533	0.40
Transmembrane Helix	534	550	0.41
Cytoplasmic	551	559	0.61
Transmembrane Helix	560	583	0.87
Non-Cytoplasmic	584	584	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKLLNDRQ FLKIQELNSP DADRRSITEP KKVPEQEEKI LVEPSEIKIN DENVQISPIT  60
   61 SEKDDSVFLS HVGVLHDKEK TRYRRGSESF ISYFDDVAFE PRPSILDGSI DEPFRRNFQG 120
  121 TILEKEMKKL EKEQRKLNRK GVHVEFKPLE TSQSIGNFSG FYVVTWMTIA LTFLRVVVDY 180
  181 YLEHGTFTDS KILQFMTTDL FTTATVDLSM YLDTYIIFLI QYCCKKRWIK WHGLGWYLNA 240
  241 IFEFTFVMVY MFLREHVWKL HWVGKIFLFL HSLVVLMKMH SFAFYNGYLW SIWEELQYSK 300
  301 KALSQFKDEE EKTQNVTMIK TLERSSTFCQ HELNVQSEKE KFPTNINLKN FFMYSMFPVL 360
  361 VYQIEYPRTK KIRWNYVFQK VCAIFGTIIL MMVDADVFMY PVAIEGLALR DAPWISLTHR 420
  421 FGQLVRLLID MIPGFIVMYL LTFYLIWEAI LNCIAELTCF GDRYFYGDWW NCVSWGDFSR 480
  481 IWNVPVHNFL VRHVYHSSMS ALKLNKMQAS VMTFLISSVI HELSMYVIFK RFRLYIFMMQ 540
  541 MSQIPLMALS ETKYLKDRTI LGNLIFWFGI CVGPSLMCTL YLTF