YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28564069
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	267	0.89
Transmembrane Helix	268	287	0.85
Non-Cytoplasmic	288	309	0.81
Transmembrane Helix	310	330	0.86
Cytoplasmic	331	346	0.75
Transmembrane Helix	347	369	0.81
Non-Cytoplasmic	370	392	0.55
Transmembrane Helix	393	421	0.75
Cytoplasmic	422	433	0.54
Transmembrane Helix	434	455	0.67
Non-Cytoplasmic	456	476	0.79
Transmembrane Helix	477	500	0.89
Cytoplasmic	501	518	0.82
Transmembrane Helix	519	537	0.91
Non-Cytoplasmic	538	543	0.68
Transmembrane Helix	544	565	0.88
Cytoplasmic	566	572	0.65
Transmembrane Helix	573	598	0.78
Non-Cytoplasmic	599	612	0.67
Transmembrane Helix	613	641	0.82
Cytoplasmic	642	655	0.70
Transmembrane Helix	656	679	0.88
Non-Cytoplasmic	680	700	0.72
Transmembrane Helix	701	724	0.85
Cytoplasmic	725	732	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEKEGIITRV SEAFGPEIQD LPSLRKIVSD KSQVHVSTNP FEFHSSNNDS EVRNRFDYSE  60
   61 EEMDDDDEVD VYADTTDNTA LLNYSQFNIK SQKKSLLKQT IINLYIDLCQ LKSFIELNRM 120
  121 GFGKITKKSD KVLHMNTRQE LIESEEFFKD TYIFQHETLA TLNNKIAQLI EFYAVLMGHP 180
  181 GNVDKCKQEL KSYLHDHIVW ERSNTWKDML GLSSQNRDII AIEDETEKLM QEKLQIEYFR 240
  241 YPLPKPINLK FTTIKNLAVP KLLFGKRAMK IGFIIIVTGV LLGVKTFNDP VEHRCMALVE 300
  301 CCAFLWASEA IPLHITGLLV PLLTVLFRVL KNDDGSVMEA AAASTEILGT MWSSTIMILL 360
  361 AGFTLGEALS QYNIANVLAS WLLALAGTKP RNVLLMAMGV VFFLSMWISN VASPVLTYSL 420
  421 LTPLLDPLDY TSPFAKALVM GVALSADIGG MASPISSPQN IISMQYLKPY GIGWGQFFAV 480
  481 ALPTGILSML CAWAVMIFSF KINKAKLEKF KPIKTRFTIK QYYIIAVTIA TILLWCLESQ 540
  541 IESAFGSSGL IAVIPIVLFF GTGLLSTKDF NTFPWSIVIL AMGGIALGKA VSSSGLLVTI 600
  601 ARALQKKIEN DGVFAILCIF GILMLVVGTF VSHTVSAIII IPLVQEVGDK LSDPKAAPIL 660
  661 VFGCALLASC GMGLASSGFP NVTAISMTDK KGNRWLTVGA FISRGVPASL LAFVCVITIG 720
  721 YGISSSVLKG ST