YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AGP1_SACBA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	124	0.98
Transmembrane Helix	125	146	0.91
Non-Cytoplasmic	147	153	0.67
Transmembrane Helix	154	178	0.81
Cytoplasmic	179	196	0.73
Transmembrane Helix	197	219	0.73
Non-Cytoplasmic	220	235	0.78
Transmembrane Helix	236	256	0.88
Cytoplasmic	257	264	0.81
Transmembrane Helix	265	286	0.88
Non-Cytoplasmic	287	313	0.91
Transmembrane Helix	314	334	0.94
Cytoplasmic	335	353	0.90
Transmembrane Helix	354	374	0.94
Non-Cytoplasmic	375	405	0.92
Transmembrane Helix	406	428	0.82
Cytoplasmic	429	450	0.89
Transmembrane Helix	451	471	0.93
Non-Cytoplasmic	472	479	0.79
Transmembrane Helix	480	504	0.88
Cytoplasmic	505	524	0.94
Transmembrane Helix	525	547	0.91
Non-Cytoplasmic	548	560	0.85
Transmembrane Helix	561	581	0.88
Cytoplasmic	582	633	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSTSPYEL KDLKNSSTEV HAAEQENEIE YFETDSNDRP SQQPHLDYEQ HNTSAVRRFL  60
   61 DSFKRADQDQ EQEAEVAQMN DLTSAISPSS RQAHELEKDE TTDKIAPHTG HKSDSLKKTI 120
  121 QPRHVLMIAL GTGIGTGLLV GNGTALVHAG PAGLLIGYAI MGSILYCIIQ ACGEMALVYS 180
  181 NLTGGYNAYP SFLVDDGFGF AVAWVYCLQW LCVCPLELVT ASMTIKYWTT SVNPDVFVII 240
  241 FYVLVITINI FGARGYAEAE FFFNCCKILM MTGFFILGII IDVGGAGNDG YIGGKYWHEP 300
  301 GAFNGVHAID RFKGVVATLV TAAFAFGGSE FIAITTAEQS NPRKAIPGAA KQMIYRILFL 360
  361 FLATIIIVGF LVPYNSDQLL GSSGGGTKAS PYVIAIASHG VRVAPHFVNA VILLSVLSMA 420
  421 NSSFYSSARL FLTLSEQGYA PKIFSYIDRA GRPLIAMCVS ALFAVIAFCA ASPKEDQVFT 480
  481 WLLAISGLSQ LFTWTAICLS HIRFRRAMKV QGRSLGELGF KSQTGVWGSI YSCIMMILIL 540
  541 IGQFWVAIAP IGEGKLDAQA FFENYLAMPI LIVLYVGYKM WNKDWKLFIR ADKIDLTSHR 600
  601 QIFDEELIKQ EDDEYRERLR TGPYWRRVLA FWC