YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6624618
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDSQRSIPTP FLTKTYQLVE DPVYDELISW NEDGTTFIVW RPAEFARDLL PKYFKHNNFS  60
   61 SFVRQLNTYG FRKVVPDRWE FSNDCFKRGE KILLRDIQRR KISQPAMAAA AAAAAAAVAA 120
  121 SAVTVAAVPV VAHIVSPSNS GEEQVISSNS SPAAAAAAIG GVVGGGSLQR TTSCTTAPEL 180
  181 VEENERLRKD NERLRKEMTK LKGLYANIYT LMANFTPGQE DCAHLLPEGK PLDLLPERQE 240
  241 MSEAIMASEI ETGIGLKLGE DLTPRLFGVS IGVKRARREE ELGAAEEEDD DRREAAAQEG 300
  301 EQSSDVKAEP MEENNSGNHN GSWLELGK

Type	Start	End	Confidence
Cytoplasmic	1	107	0.95
Transmembrane Helix	108	132	0.88
Non-Cytoplasmic	133	328	0.57