YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9955527
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	106	0.89
Transmembrane Helix	107	127	0.54
Non-Cytoplasmic	128	141	0.59
Transmembrane Helix	142	164	0.66
Cytoplasmic	165	232	0.90
Transmembrane Helix	233	252	0.93
Non-Cytoplasmic	253	294	0.89
Transmembrane Helix	295	315	0.92
Cytoplasmic	316	324	0.79
Transmembrane Helix	325	347	0.90
Non-Cytoplasmic	348	372	0.92
Transmembrane Helix	373	392	0.95
Cytoplasmic	393	401	0.72
Transmembrane Helix	402	425	0.87
Non-Cytoplasmic	426	442	0.79
Transmembrane Helix	443	463	0.84
Cytoplasmic	464	495	0.93
Transmembrane Helix	496	519	0.88
Non-Cytoplasmic	520	525	0.87
Transmembrane Helix	526	548	0.88
Cytoplasmic	549	553	0.75
Transmembrane Helix	554	575	0.91
Non-Cytoplasmic	576	581	0.76
Transmembrane Helix	582	601	0.94
Cytoplasmic	602	622	0.90
Transmembrane Helix	623	640	0.47
Non-Cytoplasmic	641	648	0.40
Transmembrane Helix	649	674	0.68
Cytoplasmic	675	883	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEESSMEGS EKEEIDSSGG GFGDMASMDS IESRWVIQDD DDSEIGVDDD NDGFDGTGLE  60
   61 SDEDEIPEHR LIRTGPRVDS FDVEALEVPG APRNDYEDLT VGRKVLLAFQ TLGVVFGDVG 120
  121 TSPLYTFSVM FSKSPVQEKE DVIGALSLVL YTLLLVPLIK YVLVVLWAND DGEGGTFALY 180
  181 SLISRHAKIS LIPNQLRSDT RISSFRLKVP CPELERSLKL KEKLENSLIL KKILLVLVLA 240
  241 GTSMVIADGV VTPAMSGGFY YHMDLSDLLD YIAVMSAVGG LKVGVDVVEQ AFSSFFFADQ 300
  301 VVMISVAFLV ILFSLQKYGT SKMGLVVGPA LLIWFCSLAG IGIYNLIKYD SSVYRAFNPV 360
  361 HIYYFFKRNS INAWYALGGC ILCATGSEAL FADLCYFSVR SVQLTFVCLV LPCLMLGYMG 420
  421 QAAYLMENHA DASQAFFSSV PGSAFWPVLF IANIAALIAS RTMTTATFSC IKQSTALGCF 480
  481 PRLKIIHTSR KFMGQIYIPV LNWFLLAVCL VVVCSISSID EIGNAYGMAE LGVMMTTTIL 540
  541 VTLIMLLIWQ INIVIVIAFL VVFLGVELVF FSSVIASVGD GSWIILVFAV IMFGIMYIWN 600
  601 YGSKLRYETE VEQKLSMDLM RELGCNLGTI RAPGIGLLYN ELVKGVPAIF GHFLTTLPAI 660
  661 HSMVIFVCIK YVPVPVVPQN ERFLFRRVCT KSYHLFRCIA RYGYKDARKE THQAFEQLLI 720
  721 ESLEKFIRRE AQERSLESDG NDDSDSEEDF PGSRVVIGPN GSMYSMGVPL LSEYRDLNKP 780
  781 IMEMNTSSDH TNHHPFDTSS DSSVSEAEQS LERELSFIHK AKESGVVYLL GHGDIRARKD 840
  841 SWFIKKLVIN YFYTFLRKNC RRGIANLSVP QSHLMQVGMT YMV