YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1212759
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPNGVTVPI SDQQEQLPCP RCDSSNTKFC YYNNYNFSQP RHFCKACRRY WTHGGTLRDV  60
   61 PVGGGTRKSA KRSRTCSNSS SSSVSGVVSN SNGVPLQTTP VLFPQSSISN GVTHTVTESD 120
  121 GKGSALSLCG SFTSTLLNHN ARATATHGSG SVIGIGGFGI GLGSGFDDVS FGLGRAMWPF 180
  181 STVGTATTTN VGSNGGHHAV PMPATWQFEG LESNAGGGFV SGEYFAWPDL SITTPGNSLK 240
  241

Type	Start	End	Confidence
Cytoplasmic	1	143	0.53
Transmembrane Helix	144	163	0.54
Non-Cytoplasmic	164	240	0.64