YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6469340
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	110	0.96
Transmembrane Helix	111	132	0.87
Non-Cytoplasmic	133	152	0.85
Transmembrane Helix	153	171	0.92
Cytoplasmic	172	180	0.81
Transmembrane Helix	181	202	0.93
Non-Cytoplasmic	203	236	0.76
Transmembrane Helix	237	260	0.86
Cytoplasmic	261	271	0.73
Transmembrane Helix	272	291	0.91
Non-Cytoplasmic	292	311	0.73
Transmembrane Helix	312	333	0.94
Cytoplasmic	334	364	0.74
Transmembrane Helix	365	384	0.63
Non-Cytoplasmic	385	403	0.63
Transmembrane Helix	404	428	0.81
Cytoplasmic	429	438	0.58
Transmembrane Helix	439	459	0.88
Non-Cytoplasmic	460	463	0.44
Transmembrane Helix	464	486	0.63
Cytoplasmic	487	543	0.59
Transmembrane Helix	544	566	0.85
Non-Cytoplasmic	567	623	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAVIQTRGL LSLPTKPIGV RSQLQPSHGL KQRLFAAKPR NLHGCLYPLT GTRNFKPLSQ  60
   61 PCMGFRFPTK REAPSSYARR RRGCWRRSCL RRSDSAAVVA SRKIFGVEVA TLKKIIPLGL 120
  121 MFFCILFNYT ILRDTKDVLV VTAKGSSAEI IPFLKTWVNL PMAIGFMLLY TKLSNVLSKK 180
  181 ALFYTVIVPF IIYFGGFGFV MYPLSNYIHP EALADKLLTT LGPRFMGPIA ILRIWSFCLF 240
  241 YVMAELWGSV VVSVLFWGFA NQITTVDEAK KFYPLFGLGA NVALIFSGRT VKYFSNLRKN 300
  301 LGPGVDGWAV SLKAMMSIVV GMGLAICLLY WWVNRYVPLP TRSKNKKEKP KMGTMESLKF 360
  361 LVSSPYIRDL ATLVVAYGIS INLVEVTWKS KLKAQFPSPN EYSAFMGDFS TCTGVATFTM 420
  421 MLLSQYVFNK YGWGVAAKIT PTVLLLTGVA FFSLILFGGP FAPLVAKLGM TPLLAAVYVG 480
  481 ALQNIFSKSA KYSLFDPCKE MAYIPLDEDT KVKGKAAIDV VCNPLGKSGG ALIQQFMILS 540
  541 FGSLANSTPY LGMILLVIVT AWLAAAKSLE GQFNSLRSEE ELEKEMERAS SVKIPVVSQD 600
  601 ESGNGSLGES PSSSPEKSAP TNL