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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|24940244
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSITCYLLV FFCVLFTPCF SITDLDALLK LKESMKGEKS KHPDSLGDWK FSASGSAHCS  60
   61 FSGVTCDQDN RVITLNVTQV PLFGRISKEI GVLDKLERLI ITMDNLTGEL PFEISNLTSL 120
  121 KILNISHNTF SGNFPGNITL RMTKLEVLDA YDNSFTGHLP EEIVSLKELT ILCLAGNYFT 180
  181 GTIPESYSEF QKLEILSINA NSLSGKIPKS LSKLKTLKEL RLGYNNAYDG GVPPEFGSLK 240
  241 SLRYLEVSNC NLTGEIPPSF GNLENLDSLF LQMNNLTGII PPELSSMKSL MSLDLSNNAL 300
  301 SGEIPESFSN LKSLTLLNFF QNKFRGSIPA FIGDLPNLET LQVWENNFSF VLPQNLGSNG 360
  361 KFIFFDVTKN HLTGLIPPDL CKSKKLQTFI VTDNFFHGPI PKGIGACKSL LKIRVANNYL 420
  421 DGPVPQGIFQ MPSVTIIELG NNRFNGQLPS EVSGVNLGIL TISNNLFTGR IPASMKNLIS 480
  481 LQTLWLDANQ FVGEIPKEVF DLPVLTKFNI SGNNLTGVIP TTVSQCRSLT AVDFSRNMIT 540
  541 GEVPRGMKNL KVLSIFNLSH NNISGLIPDE IRFMTSLTTL DLSYNNFTGI VPTGGQFLVF 600
  601 NDRSFFGNPN LCFPHQSSCS SYTFPSSKSH AKVKAIITAI ALATAVLLVI ATMHMMRKRK 660
  661 LHMAKAWKLT AFQRLDFKAE EVVECLKEEN IIGKGGAGIV YRGSMPNGTD VAIKRLVGQG 720
  721 SGRNDYGFKA EIETLGRIRH RNIMRLLGYV SNKDTNLLLY EYMPNGSLGE WLHGAKGCHL 780
  781 SWEMRYKIAV EAGKGLCYLH HDCSPLIIHR DVKSNNILLD ADFEAHVADF GLAKFLYDPG 840
  841 ASQSMSSIAG SYGYIAPEYA YTLKVDEKSD VYSFGVVLLE LIIGRKPVGE FGDGVDIVGW 900
  901 INKTELELYQ PSDKALVSAV VDPRLTGYPM ASVIYMFNIA MMCVKEMGPA RPTMREVVHM 960
  961 LTNPPQSTTH NNLINL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle