YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26986186
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.44
Transmembrane Helix	7	21	0.40
Non-Cytoplasmic	22	46	0.59
Transmembrane Helix	47	67	0.92
Cytoplasmic	68	75	0.60
Transmembrane Helix	76	95	0.92
Non-Cytoplasmic	96	100	0.56
Transmembrane Helix	101	123	0.85
Cytoplasmic	124	135	0.62
Transmembrane Helix	136	158	0.85
Non-Cytoplasmic	159	165	0.61
Transmembrane Helix	166	186	0.93
Cytoplasmic	187	520	0.73
Transmembrane Helix	521	538	0.67
Non-Cytoplasmic	539	565	0.75
Transmembrane Helix	566	587	0.83
Cytoplasmic	588	597	0.86
Transmembrane Helix	598	620	0.91
Non-Cytoplasmic	621	626	0.80
Transmembrane Helix	627	649	0.88
Cytoplasmic	650	661	0.74
Transmembrane Helix	662	682	0.90
Non-Cytoplasmic	683	690	0.75
Transmembrane Helix	691	713	0.93
Cytoplasmic	714	743	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGAVLVAI AASIGNLLQG WDNATIAGAV LYIKKEFSLE TQPLIEGLIV AMSLIGATVI  60
   61 TTFSGAVADA VGRRPLLIAS SVLYFVSGLV MLWAPNVYVL LLARLIDGFG IGLAVTLVPL 120
  121 YISETAPTDI RGLLNTLPQF SGSGGMFLSY CMVFTMSLMP QPDWRIMLGV LSIPSLMYFA 180
  181 LTVFYLPESP RWLVSKGRMA EAKRVLQRLR GREDVSGEMA LLVEGLGVGK DTHFEEYIIG 240
  241 PDDELADDGL APDQEKLKLY GAEEGVSWIA RPVRXGGQSA LGSALGLMSR HGSMVSQGKS 300
  301 LVDPLVTLFG SVHEKMPEVM GSMRSTLFPN FGSMFSVAEQ QQAKADWDAE SHRDDEDYAS 360
  361 DHGADDIEDN LNSPLISRQA TSVEGKEIAA PHGSIMGGVE SSSMQGGDAV SSMGIGGGWQ 420
  421 LAWKWTEREG ADGQKEGGFQ RIYLHEEGVS GDRRGSILSM PGGDIPPGGE YIQAAALVSQ 480
  481 PALYSKDLIE QQLAGPAMVH PSEAVAKGTK WAELFEPGVK HALFVGIGLQ ILQQFAGING 540
  541 VLYYTPQILE QAGVGILLSN IGLSSSSASI LISALTTLLM LPSIGIAMRL MDMSGRRFLL 600
  601 LSTIPVLIVA LAILVLVNVL DVGTMVHAAL STISVIVYFC FFVMGFGPIP NILCAEIFPT 660
  661 SVRGICIAIC ALTFWIGDII VTYTLPVMLN AIGLAGVFGI YAVVCMIAFV FVYMKVPETK 720
  721 GMPLEVITEF FSVGAKQGKE ATD