YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18698659, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	126	0.95
Transmembrane Helix	127	152	0.79
Non-Cytoplasmic	153	182	0.88
Transmembrane Helix	183	203	0.88
Cytoplasmic	204	214	0.80
Transmembrane Helix	215	236	0.92
Non-Cytoplasmic	237	242	0.76
Transmembrane Helix	243	263	0.94
Cytoplasmic	264	351	0.95
Transmembrane Helix	352	371	0.92
Non-Cytoplasmic	372	396	0.89
Transmembrane Helix	397	420	0.74
Cytoplasmic	421	466	0.82
Transmembrane Helix	467	489	0.68
Non-Cytoplasmic	490	494	0.73
Transmembrane Helix	495	514	0.83
Cytoplasmic	515	526	0.81
Transmembrane Helix	527	547	0.92
Non-Cytoplasmic	548	565	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTNKDPQDK EPGKAEQPTK NSGSSGVGIM KRLRRSASAT EHNLSSLRNR KSTQNLFDQH  60
   61 GNPIDLRQYR KVLDKDENGN GTNGSEKKLR YRRTQSVTRA EEISNKEEKQ RRAQPGRPIH 120
  121 RPRDSLFSWS SGFTNFSGLV NWGFLLLCIG GLRLGLENLL KYGIRINPLD WFFFISGHNE 180
  181 GEGHNALILS IYSLVHISLC LAVEKGLAME IIAEGLGLFI QIVNIVVLVC LPVVTIHLKG 240
  241 HAFSLMGAST VCFFYSVLFL KLWSYVQTNM WCRQTYYQKN PRERRPSITL AELKKGVLNG 300
  301 GEEDEDVSKL VQYPDNLTYN DLLYFLCAPT LCYELNFPRT SRVRKRFLLK RLLEVVIGVN 360
  361 VVMALFQQWI IPSVRNSLIP FSNMDVALAT ERLLKLALPN HLCWLCFFYL MFHSFLNAVG 420
  421 ELLNFADRNF YCDWWNANNI DTFWRTWNMP VHRWCVRHLY IPVVQMGYSS RQASTIVFLF 480
  481 SAVFHEYLVS VPLQIYKIWA FMGMMGQIPL SAISKSIEKK LGPRMGNIIV WASIILGQPL 540
  541 CIMAYYHDYV VQHFKNSLNG TDYSS