YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG10_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.81
Transmembrane Helix	7	26	0.84
Non-Cytoplasmic	27	58	0.84
Transmembrane Helix	59	78	0.91
Cytoplasmic	79	93	0.77
Transmembrane Helix	94	113	0.81
Non-Cytoplasmic	114	136	0.69
Transmembrane Helix	137	163	0.74
Cytoplasmic	164	278	0.88
Transmembrane Helix	279	303	0.82
Non-Cytoplasmic	304	314	0.83
Transmembrane Helix	315	338	0.86
Cytoplasmic	339	351	0.92
Transmembrane Helix	352	375	0.87
Non-Cytoplasmic	376	399	0.88
Transmembrane Helix	400	421	0.90
Cytoplasmic	422	428	0.89
Transmembrane Helix	429	449	0.94
Non-Cytoplasmic	450	469	0.89
Transmembrane Helix	470	493	0.91
Cytoplasmic	494	509	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKLAVAAIT SLWVIPMSII VNHIVPEPYM DEIFHVPQAQ QYCNGNFRSW DPMITTPPGL  60
   61 YYLSLAHVAS LFPGMLLMEN TSQSFSEACS TSVLRSTNAV SAVLCGVLVY EIIRFLGPNL 120
  121 SDRKATFMAL VMSLYPLHWF FTFLYYTDVA SLTAVLAMYL TCLKRRYVLS ALFGTLAVFI 180
  181 RQTNVVWMLF VACSGILDFT LDSSKQKGKQ EVNQELHQSS NKKGATLRSN LRKRKSDISS 240
  241 DTSDPFNHGQ TVPSTEDTSD LVYDIYTVIS TSWNLKWRIL IKFSPFIFVV VAFGIFILWN 300
  301 GGIVLGAKEA HVVSLHFAQI MYFSLVSALF TAPLHFSVNQ LRHQFHQLHR NWSLSLILTL 360
  361 VALVAGFVSV HFFSLAHPYL LADNRHYPFY LWRKIINAHW LMKYILVPVY VYSWFSILTL 420
  421 LAKTRRQTWI LVYFLATCGV LVPTPLIEFR YYTIPFYLFM LHSCVRSSSF ATWLLIGTIF 480
  481 VSINVFTMAM FLFRPFKWSH EDGVQRFIW