YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3929647
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAISGISSG TLTISRPLVT LRRSRAAVSY SSSHRLLHHL PLSSRRLLLR NNHRVQATIL  60
   61 QDDEEKVVVE ESFKAETSTG TEPLEEPNMS SSSTSAFETW IIKLEQGVNV FLTDSVIKIL 120
  121 DTLYRDRTYA RFFVLETIAR VPYFAFMSVL HMYETFGWWR RADYLKVHFA ESWNEMHHLL 180
  181 IMEELGGNSW WFDRFLAQHI ATFYYFMTVF LYILSPRMAY HFSECVESHA YETYDKFLKA 240
  241 SGEELKNMPA PDIAVKYYTG GDLYLFDEFQ TSRTPNTRRP VIENLYDVFV NIRDDEAEHC 300
  301 KTMRACQTLG SLRSPHSILD DDDTEEESGC VVPEEAHCEG IVDCLKKSIT S

Type	Start	End	Confidence
Cytoplasmic	1	131	0.91
Transmembrane Helix	132	152	0.78
Non-Cytoplasmic	153	194	0.93
Transmembrane Helix	195	214	0.89
Cytoplasmic	215	351	0.90