YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1076331, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	112	0.88
Transmembrane Helix	113	134	0.85
Non-Cytoplasmic	135	156	0.81
Transmembrane Helix	157	178	0.82
Cytoplasmic	179	199	0.93
Transmembrane Helix	200	222	0.93
Non-Cytoplasmic	223	229	0.84
Transmembrane Helix	230	252	0.89
Cytoplasmic	253	350	0.98
Transmembrane Helix	351	369	0.92
Non-Cytoplasmic	370	390	0.81
Transmembrane Helix	391	412	0.87
Cytoplasmic	413	432	0.92
Transmembrane Helix	433	454	0.92
Non-Cytoplasmic	455	476	0.87
Transmembrane Helix	477	498	0.85
Cytoplasmic	499	512	0.85
Transmembrane Helix	513	535	0.89
Non-Cytoplasmic	536	555	0.93
Transmembrane Helix	556	576	0.95
Cytoplasmic	577	586	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSIEEEARP LIEEGLILQE VKLYAEDGSV DFNGNPPLKE KTGNWKACPF ILGNECCERL  60
   61 AYYGIAGNLI TYLTTKLHQG NVSAATNVTT WQGTCYLTPL IGAVLADAYW GRYWTIACFS 120
  121 GIYFIGMSAL TLSASVPALK PAECIGDFCP SATPAQYAMF FGGLYLIALG TGGIKPCVSS 180
  181 FGADQFDDTD SRERVRKASF FNWFYFSINI GALVSSSLLV WIQENRGWGL GFGIPTVFMG 240
  241 LAIASFFFGT PLYRFQKPGG SPITRISQVV VASFRKSSVK VPEDATLLYE TQDKNSAIAG 300
  301 SRKIEHTDDC QYLDKAAVIS EEESKSGDYS NSWEDLCTVT QVEELKILIR MFPIWASGII 360
  361 FSAVYAQMST MFVQQGRAMN CKIGSFQLPP AALGTFDTAS VIIWVPLYDR FIVPLARKFT 420
  421 GVDKGFTEIQ RMGIGLFVSV LCMAAAAIVE IIRLHMANDL GLVESGAPVP ISVLWQIPQY 480
  481 FILGAAEVFY FIGQLEFFYD QSPDAMRSLC SALALLTNAL GNYLSSLILT LVTYFTTRNG 540
  541 QEGWISDNLN SGHLDYFFWL LAGLSLVNMA VYFFSAARYK QKKASS