YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30690286, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.31
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.30
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	45	0.61
Transmembrane Helix	46	67	0.90
Cytoplasmic	68	74	0.57
Transmembrane Helix	75	94	0.89
Non-Cytoplasmic	95	99	0.44
Transmembrane Helix	100	122	0.77
Cytoplasmic	123	134	0.52
Transmembrane Helix	135	157	0.85
Non-Cytoplasmic	158	164	0.49
Transmembrane Helix	165	185	0.93
Cytoplasmic	186	516	0.60
Transmembrane Helix	517	533	0.49
Non-Cytoplasmic	534	561	0.78
Transmembrane Helix	562	583	0.88
Cytoplasmic	584	592	0.86
Transmembrane Helix	593	615	0.90
Non-Cytoplasmic	616	622	0.70
Transmembrane Helix	623	644	0.88
Cytoplasmic	645	658	0.78
Transmembrane Helix	659	680	0.91
Non-Cytoplasmic	681	686	0.82
Transmembrane Helix	687	708	0.94
Cytoplasmic	709	739	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGAVLVAIA AAVGNLLQGW DNATIAGAVL YIKKEFNLES NPSVEGLIVA MSLIGATLIT  60
   61 TCSGGVADWL GRRPMLILSS ILYFVGSLVM LWSPNVYVLL LGRLLDGFGV GLVVTLVPIY 120
  121 ISETAPPEIR GLLNTLPQFT GSGGMFLSYC MVFGMSLMPS PSWRLMLGVL FIPSLVFFFL 180
  181 TVFFLPESPR WLVSKGRMLE AKRVLQRLRG REDVSGEMAL LVEGLGIGGE TTIEEYIIGP 240
  241 ADEVTDDHDI AVDKDQIKLY GAEEGLSWVA RPVKGGSTMS VLSRHGSTMS RRQGSLIDPL 300
  301 VTLFGSVHEK MPDTGSMRSA LFPHFGSMFS VGGNQPRHED WDEENLVGEG EDYPSDHGDD 360
  361 SEDDLHSPLI SRQTTSMEKD MPHTAHGTLS TFRHGSQVQG AQGEGAGSMG IGGGWQVAWK 420
  421 WTEREDESGQ KEGGFKRIYL HQEGFPGSRR GSIVSLPGGD GTGEADFVQA SALVSQPALY 480
  481 SKDLLKEHTI GPAMVHPSET TKGSIWHDLH DPGVKRALVV GVGLQILQQF SGINGVLYYT 540
  541 PQILEQAGVG ILLSNMGISS SSASLLISAL TTFVMLPAIA VAMRLMDLSG RRTLLLTTIP 600
  601 ILIASLLVLV ISNLVHMNSI VHAVLSTVSV VLYFCFFVMG FGPAPNILCS EIFPTRVRGI 660
  661 CIAICALTFW ICDIIVTYSL PVLLKSIGLA GVFGMYAIVC CISWVFVFIK VPETKGMPLE 720
  721 VITEFFSVGA RQAEAAKNE