YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20453064
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	82	0.98
Transmembrane Helix	83	107	0.88
Non-Cytoplasmic	108	137	0.95
Transmembrane Helix	138	161	0.90
Cytoplasmic	162	218	0.94
Transmembrane Helix	219	253	0.73
Non-Cytoplasmic	254	312	0.54
Transmembrane Helix	313	339	0.78
Cytoplasmic	340	349	0.49
Transmembrane Helix	350	372	0.81
Non-Cytoplasmic	373	831	0.59
Transmembrane Helix	832	864	0.79
Cytoplasmic	865	877	0.54
Transmembrane Helix	878	900	0.90
Non-Cytoplasmic	901	957	0.56
Transmembrane Helix	958	978	0.83
Cytoplasmic	979	980	0.31
Transmembrane Helix	981	1003	0.72
Non-Cytoplasmic	1004	1058	0.42
Transmembrane Helix	1059	1083	0.85
Cytoplasmic	1084	1100	0.45
Transmembrane Helix	1101	1122	0.89
Non-Cytoplasmic	1123	1407	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMISRGLFGW SPPHIQPLTP VSEVSEPPES PSPYLDPGAE HGGTGTAAQA DDEEEMEGPE  60
   61 EMEPPPAAVP FSQLFACADR FDWVLMVFGS VAAAAHGTAL IVYLHYFAKI VQVLAFPTDS 120
  121 DHLISDDQFN RLLELSLTIV YIAGGVFISG WIEVSCWILT GERQTAVIRS KYVQVLLNQD 180
  181 MSFFDTYGNN GDIVSQVLSD VLLIQSALSE KVGNYIHNMA TFISGLIIGF VNCWEIALIT 240
  241 LATGPFIVAA GGISNIFLHR LAENIQDAYA EAASIAEQAV SYVRTLYAFT NETLAKYSYA 300
  301 TSLQATLRYG ILISLVQGLG LGFTYGLAIC SCAMQLWIGR FFVIHHRANG GEIITALFAV 360
  361 ILSGLGLNQA ATNFYSFDQG RIAAYRLFEM ISRSSSGTNQ EGIILSAVQG NIEFRNVYFS 420
  421 YLSRPEIPIL SGFYLTVPAK KAVALVGRNG SGKSSIIPLM ERFYDPTLGE VLLDGENIKN 480
  481 LKLEWLRSQI GLVTQEPALL SLSIRENIAY GRDATLDQIE EAAKKAHAHT FISSLEKGYE 540
  541 TQVGKTGLTL TEEQKIKLSI ARAVLLDPTI LLLDEVTGGL DFEAERVVQE ALDLLMLGRS 600
  601 TIIIARRLSL IRNADYIAVM EEGQLLEMGT HDELINLGNL YAELLKCEEA TKLPRRMPVR 660
  661 NYNDSAAFQA ERDSSAGRGF QEPSSPKMAK SPSLQRGHNV FRSQELCFNS EESPNDHSPA 720
  721 PEKLGENGSS LDVGEKEPTI KRQDSFEMRL PELPKIDIQC PQRQKSNGSD PESPISPLLI 780
  781 SDPQNERSHS QTFSRPLGHS DDTSASVKVA KDGQHKEPPS FWRLAQLSFP EWLYAVLGSI 840
  841 GAAIFGSFNP LLAYVIALVV TTYYTSKGSH LREEVDKWCL IIACMGIVTV VANFLQHFYF 900
  901 GIMGEKMTER VRRMMFSAML RNEVGWYDEE ENSPDTLSMR LANDATFVRA AFSNRLSIFI 960
  961 QDSFAVIVAI LIGLLLGWRL ALVALATLPV LTLSAIAQKL WLAGFSKGIQ EMHRKASLVL1020
 1021 EDAVRNIYTV VAFCAGNKVM ELYRLQLQRI LRQSFFHGMA IGFAFGFSQF LLFACNALLL1080
 1081 WYTALSVDRR YMKLSTALTE YMVFSFATFA LVEPFGLAPY ILKRRRSLAS VFEIIDRVPT1140
 1141 IEPDDTSALS PPNVYGSIEL KNIDFCYPTR PEVLVLSNFS LKVNGGQTVA VVGVSGSGKS1200
 1201 TIISLIERYY DPVAGQVLLD GRDLKSYNLR WLRSHMGLIQ QEPIIFSTTI RENIIYARHN1260
 1261 ASEAEMKEAA RIANAHHFIS SLPHGYDTHI GMRGVELTQG QKQRIAIARV VLKNAPILLI1320
 1321 DEASSSIESE SSRVVQEALD TLIMGNKTTI LIAHRVAMMR HVDNIVVLNG GKIVEEGTHD1380
 1381 CLAGKNGLYV RLMQPHFGKN LRRHQLI