YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RR5_SPIOL
Protein type:	Globular with Signal Peptide
Type Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTATTTPS ATSLTTLHRR IPLFPTTTTL LSLSSSSKPL FLSLSSTRSF PTHLYCIKKD  60
   61 DIDITFFEQD NPDEEITFDP PEKPEGYIPP RAVDEPPFES EEEIALAYEE LYGAAYSGES 120
  121 LLGNDVYAMD SKIKKATGFG SKSKKEKIRD GFEENVVQVR RVTKVVKGGK HMRFRAIVVV 180
  181 GDKKGQVGVG VGKAKEVVSA VQKAAVDARR NIITVPMTKY LTFPHRNEAD YGAARVMLRP 240
  241 AAPGTGVIAG GAVRTVLEMA GVENALGKQL GSNNALNNAR ATIVAVQTMR QFSDVARDRG 300
  301 IPMEELWK

Type	Start	End	Confidence
Signal Peptide	1	37	0.71
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	308	0.99