YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3790188
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRTLPLLR HLLSSPSHGF SHSLTSTRSV TYMPRPGDGT PRAVTLIPGD GIGPLVTGAV  60
   61 EQVMDAMHAP VYFERYDVHG DMKSVPPEVM ESIRKNKVCL KGGLKTPVGG GVSSLNVQLR 120
  121 KELDLYASLV HCFNLQGLPT RHENVDIVVI RENTEGEYSG LEHEVVPGVV ESLKVMTKFC 180
  181 SERIAKYAFE YAYLNNRKVL TAVHKANIMK LADGLFLESC PEVATKYPGI KYNEIIVDNC 240
  241 CMQLVSRPEQ FDVMVTPNLY GNLVANTAAG IAGGTGVMPG GNVGADHAVF EQGASAGNVG 300
  301 NEKILEQKKA NPVALFLSSA MMLRHLQFPS FADRLKTSVK RVIAEGKYMT KDLGGNCTTQ 360
  361 EITDAVIANL D

Type	Start	End	Confidence
Signal Peptide	1	19	0.94
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	371	0.99