YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2632059, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPSKKNKPPS CGSLVTILSL DGGGVRGIIA GVILAFLEKQ LQELDGEEAR LADYFDVIAG  60
   61 TSTGGLVTAM LTVPDETGRP HFAAKDIVPF YLEHCPKIFP QPTGVLALLP KLPKLLSGPK 120
  121 YSGKYLRNLL SKLLGETRLH QTLTNIVIPT FDIKKLQPTI FSSYQLLVDP SLDVKVSDIC 180
  181 IGTSAAPTFF PPHYFSNEDS QGNKTEFNLV DGAVTANNPT LVAMTAVSKQ IVKNNPDMGK 240
  241 LKPLGFDRFL VISIGTGSTK REEKYSAKKA AKWGIISWLY DDGSTPILDI TMESSRDMIH 300
  301 YHSSVVFKAL QSEDKYLRID DDTLEGDVST MDLATKSNLE NLQKIGEKML TNRVMQMNID 360
  361 TGVYEPVAEN ITNDEQLKRY AKILSDERKL RRLRSDTMIK DSSNESQEIK

Type	Start	End	Confidence
Cytoplasmic	1	13	0.50
Transmembrane Helix	14	34	0.54
Non-Cytoplasmic	35	410	0.97