YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13620170
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	127	0.87
Transmembrane Helix	128	150	0.89
Non-Cytoplasmic	151	179	0.78
Transmembrane Helix	180	201	0.91
Cytoplasmic	202	220	0.71
Transmembrane Helix	221	240	0.70
Non-Cytoplasmic	241	272	0.89
Transmembrane Helix	273	298	0.81
Cytoplasmic	299	312	0.81
Transmembrane Helix	313	334	0.90
Non-Cytoplasmic	335	353	0.85
Transmembrane Helix	354	375	0.93
Cytoplasmic	376	386	0.93
Transmembrane Helix	387	407	0.94
Non-Cytoplasmic	408	431	0.81
Transmembrane Helix	432	449	0.87
Cytoplasmic	450	459	0.63
Transmembrane Helix	460	481	0.89
Non-Cytoplasmic	482	499	0.85
Transmembrane Helix	500	523	0.91
Cytoplasmic	524	531	0.80
Transmembrane Helix	532	550	0.93
Non-Cytoplasmic	551	780	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGGAGEYN EDRHLLRSTG DEDSIGREDG DIDVESQSPA VRSGAGGVRD LFKHLDRRFS  60
   61 LSGRRLSFKR MENNRVDRER HNPSSSSSAF SAAEEDGGGI SNLHNVDDRI DEYGFDEEVL 120
  121 GDSAPPEWAL LLIGCLIGVA AGICVAGFNK GVHVIHEWAW AGTPNEGAAW LRLQRLADTW 180
  181 HRILLIPVTG GVIVGMMHGL LEILDQIRQS TSSQRQGLDF LAGIYPVIKA IQAAVTLGTG 240
  241 CSLGPEGPSV DIGKSCANGF ALMMENNRER RIALTAAGAA SGIASGFNAA VAGCFFAIET 300
  301 VLRPLRAENS PPFTTAMIIL ASVISSTVSN ALLGTQSAFT VPSYDLKSAA ELPLYLILGM 360
  361 LCGAVSVVFS RLVTWFTKSF DFIKEKFGLP AIVCPALGGL GAGIIALKYP GILYWGFTNV 420
  421 EEILHTGKSA SAPGIWLLAQ LAAAKVVATA LCKGSGLVGG LYAPSLMIGA AVGAVFGGSA 480
  481 AEIINRAIPG NAAVAQPQAY ALVGMAATLA SMCSVPLTSV LLLFELTKDY RILLPLMGAV 540
  541 GLAIWVPSVA NQGKESESSE GRNTGRGYSS VSPLERKTEG VWRHTDNVDS LELTVIESPD 600
  601 HKSFLDEETI LEDLKVLRVM SKNYVKVSPG MTLREARNIL KDSHQNCLMV VDEDDFLAGI 660
  661 LTHGDIRRYL SNNVSTILDE NTCQVSSVCT KNIIYRGQER GLLTCYPDAT VGVAKELMEA 720
  721 RGVKQLPVVK RGEVIHKGKR RKLLGLLHYD SIWTFLRDEM SRRRSINDRR KDKEVGANGH 780
  781