YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13620228
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.18
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	88	0.68
Transmembrane Helix	89	111	0.85
Non-Cytoplasmic	112	118	0.44
Transmembrane Helix	119	134	0.18
Cytoplasmic	135	140	0.51
Transmembrane Helix	141	165	0.86
Non-Cytoplasmic	166	232	0.58
Transmembrane Helix	233	258	0.86
Cytoplasmic	259	273	0.57
Transmembrane Helix	274	294	0.75
Non-Cytoplasmic	295	312	0.82
Transmembrane Helix	313	336	0.89
Cytoplasmic	337	347	0.83
Transmembrane Helix	348	370	0.84
Non-Cytoplasmic	371	390	0.76
Transmembrane Helix	391	410	0.77
Cytoplasmic	411	418	0.68
Transmembrane Helix	419	441	0.87
Non-Cytoplasmic	442	460	0.82
Transmembrane Helix	461	484	0.91
Cytoplasmic	485	492	0.78
Transmembrane Helix	493	510	0.93
Non-Cytoplasmic	511	750	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGEYGDHN ILLRSTSSAS EGDVESQSSP RRTNTRSIKD LLKRLDRGFS GRRSSDRDHH  60
   61 HSSSPSPSNR RGVSSTADEI LGDSAPPEWA MLLVGCLLGL ATGLCVAGFN RGVHVIHEWA 120
  121 WAGTPYDGAA WLRLQRLADT WHRILLIPVL GGVIVGMLHG LLGILDQITQ SSSTQGQGFD 180
  181 LIAGIFPTVK ATQAAITLGT GCSLGPEGPS VDIGKSCAYG CSMMMENNRE RRIALIAAGA 240
  241 AAGISSGFNA AVAGSFFAIE TVLRPLRAEN SPPFTTAMII LASVISSTVS NAVLGEKQAF 300
  301 TVPTYDMKSA AELPLYLILG MLCGVVSVVF TRLVSWFTKG FQFLKEKFGL SDVVCPALGG 360
  361 LGAGVIALRY PGILYWGFTN VDEILHTGKT ASAPGIGWLA QLVAAKVVAT ALCKGSGLVG 420
  421 GLYAPSLMIG AAVGAVFGGL AGELINSAIP GNAAIAQPQA YALVGMAATL ASVCSVPLTS 480
  481 VLLLFELTKD YRILLPLMGA VGLAIWVPSV TDQPNEAESS EAKFASKGYS ILSPTDENNE 540
  541 GNGSRQSGER NNLELMEVHN SHESFDEGLI LEDLKVSQAM SNDYLKVSPS QTVKEALECM 600
  601 HDGRQSCVLV VDAEGYLEGI LTYGDVKRSL FKNHGDSSNK DLSVTDANTC LVSSICTKGI 660
  661 SYRGQDCGLL TCYPDTDLAI AKQLMEAKGI KQLPVVKRGG EFRRERKRRV IALLHYDSVE 720
  721 ETIRREVSHR KSVYQQNEEE KDKQIITNGH