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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28416699, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.86
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVKLKLIFF FFLLCQIMIS SSQNLNFTYN GFHPPLTDIS LQGLATVTPN GLLKLTNTSV  60
   61 QKTGHAFCTE RIRFKDSQSG NVSSFSTTFV FAIHSQIPTL SGHGIAFVVA PTLGLPFALP 120
  121 SQYIGLFNIS NNGNDTNHIF AVEFDTIQSS EFGDPNDNHV GIDLNGLRSA NYSTAGYRDD 180
  181 HDKFQNLSLI SRKRIQVWID YDNRSHRIDV TVAPFDSDKP RKPLVSYVRD LSSILLEDMY 240
  241 VGFSSATGSV LSEHFLVGWS FRLNGEAPML SLSKLPKLPR FEPRRISEFY KIGMPLISLS 300
  301 LIFSIIFLAF YIVRRKKKYE EELDDWETEF GKNRFRFKEL YHATKGFKEK DLLGSGGFGR 360
  361 VYRGILPTTK LEVAVKRVSH DSKQGMKEFV AEIVSIGRMS HRNLVPLLGY CRRRGELLLV 420
  421 YDYMPNGSLD KYLYNNPETT LDWKQRSTII KGVASGLFYL HEEWEQVVIH RDVKASNVLL 480
  481 DADFNGRLGD FGLARLYDHG SDPQTTHVVG TLGYLAPEHS RTGRATTTTD VYAFGAFLLE 540
  541 VVSGRRPIEF HSASDDTFLL VEWVFSLWLR GNIMEAKDPK LGSSGYDLEE VEMVLKLGLL 600
  601 CSHSDPRARP SMRQVLQYLR GDMALPELTP LDLSAGSVMN LGGRDGFSGI AMTDFSTVFK 660
  661 GFTGGSSIAD SLLSGGR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle