YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CNIH4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC  60
   61 VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN LLNWEKKKRL FKLAYIVLNL 120
  121 FLTIFWMIYS ALDDYED

Type	Start	End	Confidence
Cytoplasmic	1	6	0.89
Transmembrane Helix	7	27	0.94
Non-Cytoplasmic	28	58	0.86
Transmembrane Helix	59	81	0.85
Cytoplasmic	82	110	0.95
Transmembrane Helix	111	132	0.89
Non-Cytoplasmic	133	137	0.96