YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSLAE_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLSDGLFD DMSVLGVIGY VLEQTRFIFL VPILKRLVNL CQVVSVLLFV DAAYMAIVVA  60
   61 IVKLLGRTPQ KVLKWESFKS DDIELAPSSN HPMVLIQIPI FNEKEVCQLP IGAACKLSWP 120
  121 LDRMIIQVLD DSTEEESQKL VRLECKKWES EGITIKSEVR GGFREGFKAG ALTAGMKHSY 180
  181 VDEYKCEFVV IFDADFQPEP DFLERTVPFL VHNPEIALVQ AGWKYGNADE CCMTRIQEMS 240
  241 LNYHFAVEQK SGSSILGFFG FNGTAGVWRI KALNEAEGWK DRTIVEDMDL AVRAYLRGSK 300
  301 FVYVDDVKVK NELPSSFQAY RFQQHRWSCG PANLFKKIAM EIIKNQNVSL WKKVYLIYNF 360
  361 FFLRKIVVHI FTFVFYCVIL PATVIFPEIE VPKWTTIYIP ATITILNAIA TPKSFYLILY 420
  421 WILFENVMAM HRSIGTLIGL LETSRVKEWI VTQKLGESNN LRENLIFPDH YSFPERLRWR 480
  481 EIMVGMYLFI CGYYDFVFGR TYLYVYLFLQ SIAFFVVGVG YVGMPVPSTP VQTSE

Type	Start	End	Confidence
Cytoplasmic	1	11	0.52
Transmembrane Helix	12	30	0.39
Non-Cytoplasmic	31	42	0.52
Transmembrane Helix	43	65	0.70
Cytoplasmic	66	365	0.69
Transmembrane Helix	366	386	0.92
Non-Cytoplasmic	387	398	0.69
Transmembrane Helix	399	424	0.79
Cytoplasmic	425	481	0.81
Transmembrane Helix	482	498	0.79
Non-Cytoplasmic	499	503	0.53
Transmembrane Helix	504	526	0.84
Cytoplasmic	527	535	0.63