YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24421089
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	100	0.91
Transmembrane Helix	101	119	0.54
Non-Cytoplasmic	120	124	0.42
Transmembrane Helix	125	142	0.33
Cytoplasmic	143	150	0.47
Transmembrane Helix	151	168	0.78
Non-Cytoplasmic	169	182	0.61
Transmembrane Helix	183	201	0.88
Cytoplasmic	202	208	0.53
Transmembrane Helix	209	228	0.88
Non-Cytoplasmic	229	259	0.77
Transmembrane Helix	260	282	0.83
Cytoplasmic	283	288	0.84
Transmembrane Helix	289	311	0.92
Non-Cytoplasmic	312	345	0.84
Transmembrane Helix	346	368	0.86
Cytoplasmic	369	382	0.80
Transmembrane Helix	383	404	0.80
Non-Cytoplasmic	405	416	0.58
Transmembrane Helix	417	436	0.92
Cytoplasmic	437	444	0.54
Transmembrane Helix	445	465	0.79
Non-Cytoplasmic	466	475	0.64
Transmembrane Helix	476	503	0.83
Cytoplasmic	504	662	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRTVSDGGE DFDGDVSSQT GSHRHTDSNS THHHHGYKVG FPPARGLFAE FADGVKETFF  60
   61 ADDPLREYKD QSRSKKLWLS LVHLFPVLDW ARSYKFSMFK GDFIAGLTIA SLCIPQDIGY 120
  121 AKLAFLPAHV GLDSSFVPPL VYAMMGSSRD IAIGPVAVVS LLLGTLLQEE IDPVKSPYEY 180
  181 SRLAFTATFF AGITQAMLGF FRLGFIIEFL SHAAIIGFMA GAAVTIALQQ LKGFLGIKKF 240
  241 TKKSDIISVM ESVWGNVHHG WNYQTILIGA SFLAFLLTTK YIAKKNKKLF WVSAIAPLIS 300
  301 VVISTFCVYI TRADKQGVAI VKDIKQGINP PSFHLIYWSG PYLAKGFRIG VVAGMVALTE 360
  361 AIAIGRTFAA MKDYQIDGNK EMVALGTMNI VGSMTSCYVA TGSFSRSAVN YMAGCKTAVS 420
  421 NVVMAIVVML TLLLITPLFK YTPNAILASI IINAAVSLVD YETAYLIWKV DKMDFVALLG 480
  481 AFFGVVLASV EYGLLIAVAI SLGKILLQVT RPRTALLGNL PRTTIYRNVE QYPEAAKVPG 540
  541 VMIVRVDSAI YFTNSNYVKE RILRWLRDEE DQQQEQKLSK TEFLIVELSP VTDIDTSGIH 600
  601 ALEELLKALE KRKIQLILAN PGPAVIQKLR SAKFTELIGD DKIFLSVGDA VKKFAPKSAL 660
  661 NV