YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30685413, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKYIRKSKI DGAGAGAGGG GGGGGGGESS IALMDVVSPS SSSSLGVLTR AKSLALQQQQ  60
   61 QRCLLQKPSS PSSLPPTSAS PNPPSKQKMK KKQQQMNDCG SYLQLRSRRL QKKPPIVVIR 120
  121 STKRRKQQRR NETCGRNPNP RSNLDSIRGD GSRSDSVSES VVFGKDKDLI SEINKDPTFG 180
  181 QNFFDLEEEH TQRTTRESTP CSLIRRPEIM TTPGSSTKLN ICVSESNQRE DSLSRSHRRR 240
  241 PTTPEMDEFF SGAEEEQQKQ FIEKYNFDPV NEQPLPGRFE WTKVDD

Type	Start	End	Confidence
Cytoplasmic	1	11	0.52
Transmembrane Helix	12	34	0.50
Non-Cytoplasmic	35	286	0.99