YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17065936
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.93
Transmembrane Helix	19	39	0.86
Non-Cytoplasmic	40	67	0.88
Transmembrane Helix	68	91	0.88
Cytoplasmic	92	99	0.92
Transmembrane Helix	100	119	0.95
Non-Cytoplasmic	120	125	0.78
Transmembrane Helix	126	147	0.86
Cytoplasmic	148	163	0.82
Transmembrane Helix	164	187	0.90
Non-Cytoplasmic	188	212	0.92
Transmembrane Helix	213	232	0.96
Cytoplasmic	233	294	0.97
Transmembrane Helix	295	313	0.81
Non-Cytoplasmic	314	343	0.82
Transmembrane Helix	344	364	0.83
Cytoplasmic	365	372	0.79
Transmembrane Helix	373	394	0.91
Non-Cytoplasmic	395	405	0.80
Transmembrane Helix	406	428	0.85
Cytoplasmic	429	440	0.77
Transmembrane Helix	441	464	0.85
Non-Cytoplasmic	465	481	0.88
Transmembrane Helix	482	503	0.90
Cytoplasmic	504	535	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKNQLQVLN ALDVAKTQLY HFTAIVIAGM GFFTDAYDLF CISLVTKLLG RIYYHHEGAP  60
   61 KPGILPPGIS AAVNGVAFVG TLSGQLFFGW LGDKMGRKRV YGMTLMIMVI CSIASGLSFG 120
  121 KTPSGVIATL CFFRFWLGFG IGGDYPLSAT IMSEYANKKT RGAFIAAVFA MQGFGILAGG 180
  181 IVALVVSGAF KNAYPAPIYS VNNEGSTPQE ADIVWRIILM FGAIPALLTY YWRMKMPETA 240
  241 RYTALVAKNA TKAASDMSKV LNVEIEAEDD KIEKIVAIQG NNFGLFSKEF LHRHGLHLLG 300
  301 TTSTWFLLDI AFYSQNLFQK DIFSKIGWIP HPETMNALDE VFKIAKAQTL IALCSTVPGY 360
  361 WFTVAFIDRM GRFAIQLMGF FFMTVFMFAL AIPYNHWTKK ENRFGFVVMY SLTFFFANFG 420
  421 PNATTFVVPA EIFPARLRST CHGISAAAGK AGAIVGAFGF LYAAQSTDPS KVDAGYPTGI 480
  481 GVKNALIVLG CVNFLGMLFT LLVPESKGKS LEEMSKENEG EEEMTKVENA QTIPV