YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15216030
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.92
Transmembrane Helix	45	79	0.75
Non-Cytoplasmic	80	124	0.48
Transmembrane Helix	125	155	0.73
Cytoplasmic	156	164	0.90
Transmembrane Helix	165	185	0.86
Non-Cytoplasmic	186	191	0.82
Transmembrane Helix	192	214	0.93
Cytoplasmic	215	281	0.96
Transmembrane Helix	282	303	0.96
Non-Cytoplasmic	304	320	0.91
Transmembrane Helix	321	343	0.85
Cytoplasmic	344	384	0.96
Transmembrane Helix	385	405	0.90
Non-Cytoplasmic	406	410	0.69
Transmembrane Helix	411	431	0.87
Cytoplasmic	432	442	0.86
Transmembrane Helix	443	468	0.86
Non-Cytoplasmic	469	481	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVEKNASNN HHQTFYVSID QQIDSKFFDD DGRVKRTGTS WTASAHVITA VIGSGVLSLA  60
   61 WAIAQLGWIA GPIVMFLFAW VTYYTSVLLC ECYRNGDPVN GKRNYTYMEV VHSNLGGFQV 120
  121 QLCGLIQYLN LVGVAIGYTV ASAISMMAIV RSNCFHRSGG KDPCHMNSNI YMIAFGAVQI 180
  181 IFSQIPDFDQ LWWLSIVAVV MSFTYSTIGL GLGIGKVIEN KKFAGTITGI NDVTKAQKTW 240
  241 GSLQALGDIA FAYSFSMILI EIQDTIKAPP PSESKTMKKA TLISVIVTTF FYMLCGCFGY 300
  301 AAFGNSSPGN LLTGFGFYNP FWLLDIANAA IVIHLIGAYQ VYCQPLFAFV ENYTAKRFPD 360
  361 SDFVNKDVKI PIPGLDRYKL NLFRLVWRTV YVILTTLISM LLPFFNDIVG LLGAIGFWPL 420
  421 TVYFPVEMYI IQKKIPKWST KWICLQLLSG ACLIITIAAT IGSIAGLILD LKVFKPFKTI 480
  481 Y